Evolutionary history of arbuscular mycorrhizal fungi and genomic signatures of obligate symbiosis

- Suppl datafile 1 MCGC_Shadi_10_21-with analysis 2023
This file contains the analysis and results presence / absence for so called Missing Core Glomeromycota Genes (MCGC).
- Suppl datafile 2 CAZyme_22_10-31
This file contains the gene family counts for CAZyme families, as well as an analysis of families previously identified as Plant Cell Wall Degrading Enzymes (PCWDE) and familes selected for Figure 2 in the manuscript.
Files with summary statistics from comparative genomic analysis based on Funnanotate and used for the anlaysis in the paper: busco-complete-summary-Shadis-genomes; CAZyme.all.results; CAZyme.summar.results; MEROPS.all.results; MEROPS.summary.results; pfam.results; signalp
Ancestral reconstruction trees for CAZyme families and Peptideases with significant changes are available in the files Cazyme_trees and plots_peptidases_pdf.

- 补充数据文件1：MCGC_Shadi_10_21-with analysis 2023
本文件包含针对所谓缺失核心球囊菌门基因（Missing Core Glomeromycota Genes, MCGC）的分析结果及其存在/缺失情况统计。
- 补充数据文件2：CAZyme_22_10-31
本文件包含碳水化合物活性酶（Carbohydrate-Active enZymes, CAZyme）家族的基因家族计数数据，同时包含对先前被鉴定为植物细胞壁降解酶（Plant Cell Wall Degrading Enzymes, PCWDE）的家族，以及本论文手稿中图2所选家族的分析结果。
以下为基于Funnanotate开展比较基因组分析所得汇总统计数据文件，用于本论文的分析工作：busco-complete-summary-Shadis-genomes、CAZyme.all.results、CAZyme.summar.results、MEROPS.all.results、MEROPS.summary.results、pfam.results、signalp。
针对存在显著变化的CAZyme家族及肽酶家族的祖先重建树，可于Cazyme_trees与plots_peptidases_pdf文件中获取。