H3K27ac Signal Track for DU145
收藏DataCite Commons2025-04-01 更新2024-07-28 收录
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https://figshare.com/articles/H3K27ac_Signal_Track_for_DU145/12442796/1
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Genome-wide signal tracks for each sample were generated in two stages: (i) assess ChIP–seq quality and obtain the predominant fragment length using phantompeakqualtools (https://code.google.com/archive/p/phantompeakqualtools/); (ii) use align2rawsignal (https://code.google.com/archive/p/align2rawsignal/wikis/Method.wiki) to generate signal track (parameters: -n = 5, -k = epanechnikov, -l = [frag-ment length from step (i)], -w = 150, -f = 0).
所有样本的全基因组信号轨道(genome-wide signal tracks)均通过两个阶段生成:① 利用phantompeakqualtools工具评估染色质免疫共沉淀测序(ChIP-seq)质量,并获取样本的优势片段长度,工具访问地址为:https://code.google.com/archive/p/phantompeakqualtools/;② 借助align2rawsignal工具生成信号轨道,参数设置为:-n=5,-k=epanechnikov(埃帕涅奇科夫核),-l=步骤①中得到的片段长度,-w=150,-f=0,工具方法页面地址为:https://code.google.com/archive/p/align2rawsignal/wikis/Method.wiki。
提供机构:
figshare
创建时间:
2020-06-07



