Additional file 2 of Investigation of fiber utilization in the rumen of dairy cows based on metagenome-assembled genomes and single-cell RNA sequencing

Additional file 1: Supplementary Table S1. Summary of sequence data generated from rumen samples of 49 dairy cows. Supplementary Table S2. Summary of rumen bacterial genomes recovered from 49 dairy cows. Supplementary Table S3. Numbers of each CAZyme family predicted in the total metagenome. Supplementary Table S4. PUL profile of MAGs in Bacteroidetes. Supplementary Table S5. DEGs of each rumen epithelial cell type. Supplementary Table S6. List of microbial proteins derived from the 30 key MAG sequence data. Supplementary Table S7. Localization-filtered bovine receptor proteins. Supplementary Table S8. Interactions identified using domain–domain-based protein–protein predictions between microbial and bovine receptor proteins. Supplementary Table S9. Genes of short-chain fatty acid catabolic process and ketone body biosynthetic process gene sets.

附加文件1：
补充表S1：49头泌乳奶牛瘤胃样本的测序数据汇总
补充表S2：从49头泌乳奶牛中获取的瘤胃细菌基因组汇总
补充表S3：总宏基因组中预测得到的各碳水化合物活性酶（CAZyme）家族数量
补充表S4：拟杆菌门（Bacteroidetes）中宏基因组组装基因组（Metagenome-Assembled Genome, MAG）的多糖利用位点（Polysaccharide Utilization Locus, PUL）谱
补充表S5：各瘤胃上皮细胞类型的差异表达基因（Differentially Expressed Genes, DEGs）
补充表S6：源自30条关键宏基因组组装基因组序列数据的微生物蛋白列表
补充表S7：经亚细胞定位筛选的牛受体蛋白
补充表S8：基于结构域-结构域互作预测得到的微生物蛋白与牛受体蛋白间的相互作用结果
补充表S9：短链脂肪酸分解代谢过程与酮体生物合成过程基因集所涵盖的基因