RFLPs for 1001 Arabidopsis Genomes

<br> A list of all the RFLP sites that are variable among the 1001 Arabidopsis genomes for EcoRI, BamHI, NotI, PstI, and HindIII. The genotypes of all 1135 lineages are listed at each of those sites. The format is a modified VCF format, such that 0|0 means that the accession has the restriction site (i.e., same genotype as TAIR10), while 1|1 means that the accession lacks the restriction site (i.e., different genotype from TAIR10). If you'd like another restriction enzyme added, please get in touch ([e-mail]), or feel free to use the code posted at the GitHub repo (https://github.com/jsharbrough/1001ArabidopsisGenomes_RFLPs) to do it yourself. Amplicons and primers for selected markers are also posted here.

本数据集收录了针对EcoRI、BamHI、NotI、PstI及HindIII五种限制性内切酶，在1001份拟南芥基因组中存在多态性的所有限制性片段长度多态性（Restriction Fragment Length Polymorphism, RFLP）位点。所有1135个谱系的基因型均在对应位点处予以列出。本数据集采用改良的变异识别格式（Variant Call Format, VCF），其中0|0表示该种质材料携带限制性酶切位点（即与TAIR10参考基因组基因型一致），1|1则表示该种质材料缺失该限制性酶切位点（即与TAIR10参考基因组基因型存在差异）。若您希望添加其他限制性内切酶，可联系邮箱[e-mail]，或自行使用GitHub仓库（https://github.com/jsharbrough/1001ArabidopsisGenomes_RFLPs）中公开的代码进行处理。本数据集同时发布了部分选定标记的扩增子与引物。