search for downstream target genes of HTG3 based on RNA seq data
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https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE197401
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With the threshold of absolute value of log2 (Fold Change) ≥1 and P < 0.05, 4122 and 4100 differentially expressed genes (DEGs) were up-regulated and down-regulated, respectively by HS in ZH11; 4725 genes(H-DEGs) were up or down-regulated in the htg3 mutant under normal or stress conditions; Among the H-DEGs, 1025 and 947 genes were up- and down-regulated, respectively, by HS in ZH11. rice leaf mRNA profiles of 4-leaf stage ZH11 (Zhonghua 11) and htg3 mutant under normal, HS for 0.5h
以|log₂(折叠变化, Fold Change)|≥1且P值<0.05为筛选阈值,在ZH11中经热激(Heat Stress, HS)处理后,分别有4122个差异表达基因(differentially expressed genes, DEGs)上调、4100个差异表达基因下调;在正常或胁迫条件下的htg3突变体中,共计4725个基因(H-DEGs)发生差异表达;在上述H-DEGs中,有1025个和947个基因分别在ZH11中经热激处理后出现上调和下调表达。本数据集包含四叶期ZH11(中花11)及htg3突变体在正常条件、热激0.5小时下的水稻叶片mRNA表达谱。
创建时间:
2022-03-05



