List of positions located in the 7-TMs and EL2 of rhodopsin (Rho).
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https://figshare.com/articles/dataset/_List_of_positions_located_in_the_7_TMs_and_EL2_of_rhodopsin_Rho_/577103
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资源简介:
beta-2 adrenergic receptor (β2-AR) and adenosine receptor (A2A) that are in contact with the co-crystallized ligand (underlined) and/or qualified as key positions (in bold and marked with an X). The MI data refer to the analysis performed on a subset of class A receptor adding to the MSA of the 7-TMs the alignment of five EL2 positions. The position has highest MI (among all other inter-TM positions) with the listed pair position (pp). Rank is the MI ranking of that pair using a subset of class A 7-TM along with EL2 MSA (249 sequences) the degree is calculated using MI graph from top 700 MI pairs. Entropy and MI are measured in bits.
β2肾上腺素能受体(beta-2 adrenergic receptor, β2-AR)与腺苷受体(adenosine receptor, A2A)的相关位点包括两类:与已下划线标注的共结晶配体相互作用的位点,以及被标注为关键位点的位点(粗体标注并带有X标记)。本数据集的互信息(Mutual Information, MI)数据基于A类受体的一个子集分析得到:在7次跨膜结构域(7-transmembrane domains, 7-TMs)的多序列比对(multiple sequence alignment, MSA)基础上,额外加入了5个胞外环2(extracellular loop 2, EL2)位点的比对序列。该位点与所列配对位点(pp)之间的MI值在所有跨膜结构域间位点中最高。排名(Rank)指基于包含249条序列的A类7-TMs及EL2的MSA子集,计算得到的该配对的MI排名;节点度(degree)则通过取自前700个MI对的互信息图计算得出。熵(Entropy)与互信息(MI)的计量单位为比特(bits)。
创建时间:
2009-03-05



