Additional file 8 of FixNCut: single-cell genomics through reversible tissue fixation and dissociation
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Additional file 8: Table 7. This table contains the results of gene set enrichment analysis (GSEA) between fixed and fresh mouse colon samples by cell population. The analysis was performed using the fgsea package and multiple gene sets from MSigDB. Gene sets containing 10-300 genes were included, and results were considered significant if they had an FDR adjusted p-value < 0.05 and if >5 genes from the gene set overlapped with the differentially expressed genes, representing more than 15% of the gene set (see Methods).
附加文件8:表7。本表格收录了按细胞群体划分的固定处理与新鲜小鼠结肠样本之间的基因集富集分析(gene set enrichment analysis, GSEA)结果。本次分析采用fgsea软件包与来自分子特征数据库(Molecular Signatures Database, MSigDB)的多组基因集完成。研究纳入包含10至300个基因的基因集,当结果满足错误发现率(False Discovery Rate, FDR)校正后的P值小于0.05,且该基因集中有超过5个基因与差异表达基因存在重叠、重叠基因占该基因集比例超过15%时,该结果被视为具有显著性(详见方法部分)。
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figshare
创建时间:
2024-08-15



