DART-FISH (Kalhor, Chen et al) human brain motor cortex

This data set is associated with Kalhor, Chen et al (https://doi.org/10.1101/2023.08.16.553610). This repo contains the DART-FISH data on human brain presented in the paper.File descriptionM1C_cell_metadata.tsv: a data table containing the cell IDs, locations (xg and yg columns) and annotations (class and subclass columns)spots_table.tsv: a data table containing the information for all decoded spots, including location (xg and yg columns), gene, and the ID of the cell they were assigned to (cell_label column)brightfield.tif, DRAQ5.tif, RiboSoma_N9.tif: brightfield, nuclear stain, and RiboSoma stain for the entire imaged area, respectivelysegmentation_mask_custom.npy: Cell segmentation mask generated by a fine-tuned cellpose model<br>

本数据集关联Kalhor、Chen等人的研究（https://doi.org/10.1101/2023.08.16.553610）。本仓库包含该论文中展示的人类大脑DART-FISH数据集。
文件说明：
M1C_cell_metadata.tsv：该数据表包含细胞ID、位置信息（xg与yg列）及注释信息（class与subclass列）。
spots_table.tsv：该数据表包含所有已解码斑点的相关信息，包括位置（xg与yg列）、基因，以及其被分配至的细胞ID（cell_label列）。
brightfield.tif、DRAQ5.tif、RiboSoma_N9.tif：分别对应整个成像区域的明场图像、细胞核染色图像与RiboSoma染色图像。
segmentation_mask_custom.npy：由微调后的Cellpose模型生成的细胞分割掩码。