Large-scale genomic rearrangements are a potential explanation for reproductive isolation in the Pogonomyrmex dependent-lineage system

The data published here were generated for a study of genomic rearrangements in the J1/J2 pair of dependent lineages in the Pogonomyrmex barbatus study population near Rodeo, New Mexico, USA. The data include two high-quality reference genomes, one for each lineage, and their gene annotations. The genomes were assembled from a combination of long-read PacBio HiFi sequencing and the linked-read Tell-seq protocol. Gene annotations include general annotations by the GeMoMa pipeline and special-tailored annotations of the odorant receptor (OR) gene family by the HAPpy-ABCENTH pipeline. The file J1_ORsubfamilies.txt contains the assignment of each OR gene to a subfamily of the OR gene family. Please see details in the paper.