Data and code for: HIV-1 Rev arginine-rich motif is largely conserved as a peptide but not as codons, with no excess of docking-defined compensation

Supporting data, analysis code and supplementary tables for the manuscript on the HIV-1 Rev arginine-rich motif (ARM, residues 35-50). The package contains the code used for the covariation (PDN), docking-score, adjusted odds ratio, conservation and machine-learning analyses; the supplementary tables S1-S16; per-position entropy and dN/dS tables; and the list of GenBank accessions for the RRE sample. Sequences were obtained from the Los Alamos HIV Sequence Database (1997-2021). Code is released under the MIT licence and data under CC BY 4.0. See README.md for the file index and the order in which to run the scripts.