Additional file 4 of A primary cell wall cellulose-dependent defense mechanism against vascular pathogens revealed by time-resolved dual transcriptomics

Additional file 4: Table S3. Fo5176 differentially expressed genes (DEGs) during Arabidopsis root infection over time. Significant DEGs in Fo5176 during Arabidopsis root infection compared to in vitro germinated microconidia. Logarithmic fold-change (logFC) and corrected p-value (FDR) are presented in columns for each time point separately; gaps correspond to non-significant changes in gene expression at those time points. The genes are clustered based on their co-expression pattern (Additional file 5: Figure S2A). DEGs with the entry “no cluster” were not associated to a cluster by the clustering algorithm, DEGs only expressed in vitro were not included in the clustering (excluded). All DEGs were further analyzed for presence of carbohydrate active domains in their corresponding encoded protein sequences using the dbCAN2-meta server (http://bcb.unl.edu/dbCAN2/, 8 October 2020) and were highlighted in yellow (Additional file 5: Figure S2B). The genes were described based on IPR and PFAM; IPR_description: protein family classification by InterPro, PFAM: protein family classification by PFAM (both obtained from [10]).