Additional file 2: of Impact of nutrition and rotavirus infection on the infant gut microbiota in a humanized pig model

Figure S2. Comparison of the microbiota alpha diversity of HIFM pig samples based on the diets (deficient or sufficient) and HRV status (pre- and post- HRV challenge). Diversity in the feces (A & B), intestines (C & D), and systemic tissues (E & F) samples are shown irrespective of time points, intestinal locations, or tissues type. Alpha diversity was analyzed based on the rarefaction curve of the phylogenetic diversity and Choa1: richness. Bars represent the standard deviations. No significant differences were detected between diets for either the phylogenetic diversity or richness (P > 0.05). General composition of the HIFM pig samples microbiota using a principal coordinated analysis (PCoA). Samples were clustered based on the diet or HRV status for the feces (G & H), intestines (I & J), and systemic organs (K & L). (ZIP 362 kb)