Manual organelle segmentations (crop337) in near-isotropic, reconstructed volume electron microscopy (FIB-SEM) of mouse liver acinus (jrc_mus-liver-zon-1)

<b>This acquisition is part of the CellMap 2024 Segmentation Challenge</b><b>Challenge DOI:</b> https://doi.org/10.25378/janelia.c.7456966<b>Challenge Website:</b> https://cellmapchallenge.janelia.org/<b>Annotation description</b>: Dense segmentations of nucleus in jrc_mus-liver-zon-1 using Amira 3D 2021.1, Classic Segmentation Workroom and the 'Using Amira to manually segment organelles in vEM for machine learning V.3' annotation protocol.<b>Annotation ID</b>: crop337<b>Primary Annotator</b>: Woohyun Park<b>Annotation protocol</b>: Using Amira to manually segment organelles in vEM for machine learning V.3 (http://dx.doi.org/10.17504/protocols.io.bp2l61rb5vqe/v3)<b>Software</b>: Amira 3D 2021.1, Classic Segmentation Workroom<b>Annotated voxel size (nm)</b>: 32 x 32 x 32 (x, y, z)<b>Annotated data dimensions (µm)</b>: 64 x 32 x 32 (x, y, z)<b>Annotated data offset (nm)</b>: 105612 x 86412 x 124236 (x, y, z)<b>Classes annotated</b>: nucleus<b>Dataset URL</b>: s3://janelia-cosem-datasets/jrc_mus-liver-zon-1/jrc_mus-liver-zon-1.zarr/recon-1/labels/groundtruth/crop337<b>Source (EM) dataset ID</b>: jrc_mus-liver-zon-1<b>Source (EM) voxel size (nm)</b>: 8 x 8 x 8 (x, y, z)<b>Source (EM) data dimensions (µm)</b>: 397.16 x 171.61 x 188.81 (x, y, z)<b>Source (EM) DOI</b>: https://doi.org/10.25378/janelia.24128700<b>Visualization website</b>: https://openorganelle.janelia.org/datasets/jrc_mus-liver-zon-1<b>Publication:</b> <i>CellMap Segmentation Challenge,</i> 2024.<b>The CellMap Project Team during this time consisted of:</b> David Ackerman, Davis Bennett, Marley Bryant, Hannah Nguyen, Grace Park, Alyson Petruncio, Alannah Post, Jacquelyn Price, Diana Ramirez, Jeff Rhoades, Rebecca Vorimo, Aubrey Weigel, Marwan Zouinkhi, Yurii Zubov.<b>The CellMap Project Team Steering Committee during this time consisted of:</b> Misha Ahrens, Christopher Beck, Teng-Leong Chew, Daniel Feliciano, Jan Funke, Harald Hess, Wyatt Korff, Jennifer Lippincott-Schwartz, Zhe J. Liu, Kayvon Pedram, Stephan Preibisch, Stephan Saalfeld, Ronald Vale, and Aubrey Weigel.

本数据集隶属于CellMap 2024分割挑战赛（CellMap 2024 Segmentation Challenge）。
挑战DOI：https://doi.org/10.25378/janelia.c.7456966
挑战网站：https://cellmapchallenge.janelia.org/
注释说明：采用Amira 3D 2021.1、Classic Segmentation Workroom及《用于机器学习的体积电子显微镜（vEM）样本中细胞器手动分割 V.3》（Using Amira to manually segment organelles in vEM for machine learning V.3）注释规程，对jrc_mus-liver-zon-1样本中的细胞核进行全致密分割。
注释ID：crop337
主要注释者：Woohyun Park（朴宇炫）
注释规程：《用于机器学习的体积电子显微镜（vEM）样本中细胞器手动分割 V.3》（Using Amira to manually segment organelles in vEM for machine learning V.3，http://dx.doi.org/10.17504/protocols.io.bp2l61rb5vqe/v3）
所用软件：Amira 3D 2021.1、Classic Segmentation Workroom
注释体素尺寸（纳米）：32×32×32（x、y、z轴）
注释数据尺寸（微米）：64×32×32（x、y、z轴）
注释数据偏移量（纳米）：105612×86412×124236（x、y、z轴）
注释类别：细胞核（nucleus）
数据集URL：s3://janelia-cosem-datasets/jrc_mus-liver-zon-1/jrc_mus-liver-zon-1.zarr/recon-1/labels/groundtruth/crop337
源电子显微镜数据集ID：jrc_mus-liver-zon-1
源电子显微镜体素尺寸（纳米）：8×8×8（x、y、z轴）
源电子显微镜数据尺寸（微米）：210×155.73×426.69（x、y、z轴）
源电子显微镜DOI：https://doi.org/10.25378/janelia.24135486
可视化网站：https://openorganelle.janelia.org/datasets/jrc_mus-liver-zon-2
出版物：《CellMap分割挑战赛》，2024年。
当期CellMap项目团队成员包括：David Ackerman、Davis Bennett、Marley Bryant、Hannah Nguyen、Grace Park、Alyson Petruncio、Alannah Post、Jacquelyn Price、Diana Ramirez、Jeff Rhoades、Rebecca Vorimo、Aubrey Weigel、Marwan Zouinkhi、Yurii Zubov。
当期CellMap项目指导委员会成员包括：Misha Ahrens、Christopher Beck、Teng-Leong Chew、Daniel Feliciano、Jan Funke、Harald Hess、Wyatt Korff、Jennifer Lippincott-Schwartz、Zhe J. Liu、Kayvon Pedram、Stephan Preibisch、Stephan Saalfeld、Ronald Vale及Aubrey Weigel。