Additional file 3: of Proteogenomic analysis of psoriasis reveals discordant and concordant changes in mRNA and protein abundance

Curated ordered gene lists from microarray experiments performed with skin-associated cell types. We aggregated 2178 gene lists generated from microarray experiments included in Gene Expression Omnibus (GEO). Gene lists were derived from one of 11 types of experiments: a KCs stimulated with cytokines (59 lists; *HaCaT; **reconstituted epidermis); b KC gene perturbations (65 lists; *HaCaT; **reconstituted epidermis; “ + ” denotes overexpression of a gene rather than interfering RNA knockdown); c non-cytokine treatments applied to KCs (169 lists; *HaCaT; **reconstituted epidermis); d fibroblast treatments (182 lists; *non-primary cells); e psoriasis treatment responses (26 lists; *comparison to lesions prior to treatment rather than lesions from placebo-treated patients); f laboratory mouse phenotypes (35 lists); g Peripheral blood mononuclear cell (PBMC) treatments (461 lists); h T-cell treatments (358 lists; *transformed cell line rather than primary T cells); i dendritic cell treatments (360 lists); j macrophage treatments (337 lists), and (K) human skin diseases (123 lists; *comparison to uninvolved skin from patients rather than normal skin from independent controls). All lists except (f) were generated from experiments using human cells or tissues. For (f), lists of mouse genes were converted to human genes based upon a mapping of human-mouse orthologues. This additional file includes a description of each list along with GEO series accessions, GEO platform identifiers, and Pubmed IDs (PMIDs) of any associated publications. (XLSX 113 kb)