Recombination rate variation in Cardiocondyla obscurior

Datasets produced to analyze recombination rate variation in <em>C. obscurior</em>. This includes the following files: <br> - <strong>TEislands.w250kb.bed</strong>: bed file with coordinates of TE islands <br> - <strong>final.metrics.in250kbwindows.tsv</strong>: tsv file with various metrics estimated in 250-kb nonoverlapping windows. These metrics include recombination rates, population genomics estimates as well as other sequence parameters (e.g. TE/gene content) <br> - <strong>introgression.250kb.bed</strong>: bed files with coordinates of regions with substantially high Dxy between grandparental haplotypes <br> - <strong>manuallyCurated.markers.forR.txt</strong>: formatted and manually curated MSTmap output <br> - <strong>Cobs3.1.chrom-size.txt</strong>: chromosome length <br> - <strong>manuallyCurated.markers.correctPhase.xlsx</strong>: markers used to produce reference genetic map with the correct phase <br> - <strong>SVs folder</strong>: contains: <br> ---- <strong>sv.bed.filtered.repeat.0.2.txt</strong>: coordinates of SVs with less than 0.2 repeat content <br> ---- <strong>sv.type.recomb.repeat.freq.all.txt</strong>: coordinates and frequencies of all SVs as well as their repeat content (meanperc column) and the corresponding recombination rate

本数据集用于分析<em>C. obscurior</em>的重组率变异特征，包含以下文件：
- <strong>TEislands.w250kb.bed</strong>：存储转座子岛（Transposable Element Islands，TE）坐标信息的BED格式文件
- <strong>final.metrics.in250kbwindows.tsv</strong>：存储250kb非重叠窗口内估算得到的各类统计指标的TSV（Tab-Separated Values）格式文件，涵盖重组率、群体基因组学估算值及其他序列参数（例如转座子/基因含量）
- <strong>introgression.250kb.bed</strong>：存储祖父母级单倍型间平均核苷酸差异度（Dxy）显著较高的区域坐标的BED格式文件
- <strong>manuallyCurated.markers.forR.txt</strong>：经格式化与人工整理的MSTmap输出结果文件
- <strong>Cobs3.1.chrom-size.txt</strong>：存储染色体长度信息的文件
- <strong>manuallyCurated.markers.correctPhase.xlsx</strong>：用于构建具备正确单倍型相位的参考遗传图谱的标记文件
- <strong>SVs文件夹</strong>：内含以下文件：
---- <strong>sv.bed.filtered.repeat.0.2.txt</strong>：存储重复序列含量低于0.2的结构变异（Structural Variation，SV）坐标信息的文件
---- <strong>sv.type.recomb.repeat.freq.all.txt</strong>：存储所有结构变异的坐标、频率、重复序列含量（含meanperc列）以及对应重组率的文件