Baudement et al 2026 Supplementary Data

Supplementary Data and Source Data for Baudement et al (2026). This record contains the Source Data and Supplementary Data files underlying the Main Figure and Extended Data Figures of the manuscript. Source Data files give the exact numerical values plotted in each figure panel. Source Data Parent Figure Filename Data description Source Data Fig. 1 SourceData_Fig1.xlsx Statistical Source Data for Fig. 1 c, d, e, and f. Source Data Fig. 2 SourceData_Fig2.zip Statistical Source Data for Fig. 2 a, b, c, and d. Source Data Fig. 3 SourceData_Fig3.xlsx Statistical Source Data for Fig. 3 a, b, c, and d. Source Data Fig. 4 SourceData_Fig4.xlsx Statistical Source Data for Fig. 4 a, b, c, and d. Source Data Fig. 5 SourceData_Fig5.xlsx Statistical Source Data for Fig. 5 b, c, d, e, f, and g. Source Data Fig. 6 SourceData_Fig6.xlsx Statistical Source Data for Fig. 6 a and b. Source Data Extended Data Fig. 1 SourceData_ExtendedDataFig1.xlsx Statistical Source Data for Extended Data Fig. 1 a, b, c, and d. Source Data Extended Data Fig. 2 SourceData_ExtendedDataFig2.zip Statistical Source Data for Extended Data Fig. 2 a, b, c, and d. Source Data Extended Data Fig. 4 SourceData_ExtendedDataFig4.zip Statistical Source Data for Extended Data Fig. 4 a, b, c, and d. Source Data Extended Data Fig. 5 SourceData_ExtendedDataFig5.xlsx Statistical Source Data for Extended Data Fig. 5 a, b, and c. Source Data Extended Data Fig. 6 SourceData_ExtendedDataFig6.xlsx Statistical Source Data for Extended Data Fig. 6 a, b, and c. Source Data Extended Data Fig. 7 SourceData_ExtendedDataFig7.xlsx Statistical Source Data for Fig. 7 a, b, and c. Source Data Extended Data Fig. 8 SourceData_ExtendedDataFig8.xlsx Statistical Source Data for Fig. 8. Supplementary Files Number Filename Legend or Descriptive Caption Supplementary Data 1 Supplementary_Data_1.zip MultiQC reports spanning all sequencing data produced in the study. Supplementary Data 2 Supplementary_Data_2.txt Genomic coordinates of 225,801 reference robust open chromatin regions in the Atlantic salmon genome, including coordinates of their syntenic/orthologous regions within the Atlantic salmon, rainbow trout and northern pike genomes, based on whole genome alignment. Supplementary Data 3 Supplementary_Data_3.xlsx Final dataset of active promoter and enhancer elements belonging to the three Alignment categories (‘Shared’, ‘Alignable only’ and ‘Exclusive only’) Supplementary Data 4 Supplementary_Data_4.txt All conserved CNEs defined in the northern pike genome, including their estimated phylogenetic age. Supplementary Data 5 Supplementary_Data_5.tsv Atlantic salmon enhancer-CNEs from the three alignment categories: ‘Shared’, ‘Alignable only’ and ‘Exclusive’. Supplementary Data 6 Supplementary_Data_6.xlsx Atlantic salmon enhancer-CNEs counts and length information split per: sample-types), ii) alignment category (Shared, Alignable only, Exclusive) and iii) rediploidization region (Early and Late).