Human sequence alignment data set used for analysis of SPDI algorithm and tools

Collection of alignment segments produced on October 30, 2019. The ADS currently consists of over 2,680,000 pairwise alignment segments generated from over 350,000 distinct input sequences. Old assembly to current Genome Reference Consortium (GRC) (Church et al., 2011) primary assemblies (e.g. GRCh36(hg18) or GRCh37(hg19) with GRCh38(hg38)) Patches, alternative loci, or pseudoautosomal regions (PAR) to GRC primary assembly RefSeq (O’Leary et al., 2016) and select GenBank (Benson et al., 2018) transcripts to selected RefSeq genomic regions, also known as RefSeqGene (NG), a member of the Locus Reference Genome (LRG) collaboration (Dalgleish et al., 2010). Current RefSeq transcripts (NM/NR/XM/XR) and RefSeq genomic regions (NG) to the latest Assembly Previous versions of NG and RefSeq transcripts (NM/NR) to GRC primary assembly