Additional file 2 of The chromosome-scale reference genome of mirid bugs (Adelphocoris suturalis) genome provides insights into omnivory, insecticide resistance, and survival adaptation
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Additional file 2: Table S1. Summary of Illumina reads (DNA) for A. suturalis. Table S2. Summary of PacBio reads for A. suturalis. Table S3. Summary of 10x Chromium Linked-reads for A. suturalis. Table S4. Summary of Hi-C reads for A. suturalis. Table S5. Summary of A. suturalis genome assembly. Table S6. Summary of Illumina reads mapping to A. suturalis genome. Table S7. Assessment of the genome assembly completeness by BUSCO. Table S8. Assessment of the genome annotation completeness by BUSCO. Table S9. Relative amounts of the major TE families in A. suturalis genome. Table S10. GO enrichment analysis of orthologous genes in A. suturalis and A. lucorum. Table S11. KEGG enrichment analysis of orthologous genes in A. suturalis and A. lucorum. Table S12. KEGG enrichment analysis of gene families that are unique to A. suturalis. Table S13. Gene number comparison of detoxification enzymes and insecticide resistance genes in A. suturalis. Table S14. Gene number comparison of chemosensory receptor genes in A. suturalis. Table S15. Gene number comparison of digestive enzyme genes in A. suturalis. S16. Gene number involved in energy consumption during A. suturalis flight. Table S17. Functional annotation of candidate effectors for A. suturalis. Table S18. Primers used for dsRNA amplification and relative expression detection.
附加文件2:
表S1 中黑盲蝽(Apolygus suturalis, A. suturalis)的Illumina DNA测序读数汇总
表S2 中黑盲蝽的PacBio测序读数汇总
表S3 中黑盲蝽的10x Chromium连锁测序读数汇总
表S4 中黑盲蝽的Hi-C测序读数汇总
表S5 中黑盲蝽基因组组装结果汇总
表S6 比对至中黑盲蝽基因组的Illumina测序读数汇总
表S7 基于Benchmarking Universal Single-Copy Orthologs (BUSCO)的基因组组装完整性评估结果
表S8 基于Benchmarking Universal Single-Copy Orthologs (BUSCO)的基因组注释完整性评估结果
表S9 中黑盲蝽基因组主要转座子(Transposable Element, TE)家族相对含量统计
表S10 中黑盲蝽与绿盲蝽(Apolygus lucorum, A. lucorum)同源基因的基因本体论(Gene Ontology, GO)富集分析结果
表S11 中黑盲蝽与绿盲蝽同源基因的京都基因与基因组百科全书(Kyoto Encyclopedia of Genes and Genomes, KEGG)富集分析结果
表S12 中黑盲蝽特有基因家族的KEGG富集分析结果
表S13 中黑盲蝽解毒酶与杀虫剂抗性基因数量对比
表S14 中黑盲蝽化学感受受体基因数量对比
表S15 中黑盲蝽消化酶基因数量对比
表S16 中黑盲蝽飞行过程中能量消耗相关基因数量统计
表S17 中黑盲蝽候选效应因子功能注释结果
表S18 用于双链RNA(double-stranded RNA, dsRNA)扩增及相对表达量检测的引物序列汇总
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figshare
创建时间:
2023-09-20



