Supplementary data for the manuscript titled "Integrative genomic reconstruction reveals heterogeneity in carbohydrate utilization across human gut bifidobacteria"

This repository contains the following files:bif_263_fna.zip - FASTA file with genomic sequences of 263 reference <i>Bifidobacterium</i> genomesbif_263_subsystem_proteins.zip - FASTA file with 39589 protein sequences of 589 curated functional roles predicted in 263 reference <i>Bifidobacterium</i> genomesselected_gbk_files.zip - GenBank files of six reference <i>Bifidobacterium</i> genomes. These files have the specific locus tags that were reported in several supplementary tables (RNA-seq data of <i>Bifidobacterium catenulatum</i> subsp. <i>kashiwanohense </i>Bg42221_1E1 and regulon reconstructions)<br>

本数据集仓库包含以下文件：
bif_263_fna.zip：包含263株参考双歧杆菌（Bifidobacterium）基因组序列的FASTA格式文件；
bif_263_subsystem_proteins.zip：包含从263株参考双歧杆菌基因组中预测得到的、对应589个经人工整理的功能角色的39589条蛋白质序列的FASTA格式文件；
selected_gbk_files.zip：包含6株参考双歧杆菌基因组的GenBank格式文件。这些文件带有多个补充表中报道的特定基因座标签（locus tags），相关数据包括链状双歧杆菌龟山亚种（Bifidobacterium catenulatum subsp. kashiwanohense）Bg42221_1E1的RNA测序（RNA-seq）数据以及调控元重建（regulon reconstructions）结果。