Additional file 10 of MetaPro: a scalable and reproducible data processing and analysis pipeline for metatranscriptomic investigation of microbial communities

Additional file 10: Table S6.Comparisons of Enzyme annotations between MetaPro and SAMSA2 for NOD mouse, kimchi, and human oral biofilm datasets. This table compares the ECs of MetaPro against SAMSA2 on the NOD mouse, kimchi, and human oral biofilm datasets.  The SAMSA2 ECs were filtered for EC co-occurrence pairs that were not found in Swiss-Prot, and multiple unique ECs that annotated to the same gene family.  The resulting SAMSA2 ECs were contrasted against MetaPro’s EC, yielding a common set of ECs found in both tools, ECs found only by MetaPro, and ECs found only by SAMSA2. The same comparison is shown for MetaPro’s high-qaulity EC predictions.

附加文件10：表S6。MetaPro与SAMSA2针对NOD小鼠、韩式泡菜（kimchi）及人口腔生物膜数据集的酶注释对比。本表格针对NOD小鼠、韩式泡菜及人口腔生物膜三类数据集，对比了MetaPro与SAMSA2的酶委员会（Enzyme Commission, EC）编号注释结果。研究首先对SAMSA2的EC编号进行筛选：移除未在瑞士蛋白质数据库（Swiss-Prot）中收录的EC共现对，以及注释至同一基因家族的多个独立EC编号。随后将处理后的SAMSA2 EC编号与MetaPro的EC编号进行比对，分别得到两类工具共同检出的EC编号、仅MetaPro可检出的EC编号，以及仅SAMSA2可检出的EC编号。针对MetaPro的高质量EC预测结果，同样开展了上述对比分析。