Additional file 2 of Reconstructing A/B compartments as revealed by Hi-C using long-range correlations in epigenetic data

TCGA A/B compartments. Estimated compartments for 12 TCGA cancers using 450 k methylation data, as a concatenated TXT file. There are six columns; the file is tab separated and has a header. Column 1 (tcga_code) is the TCGA short code for the cancer. Columns 2 (chr), 3 (start) and 4 (end) are the chromosomal coordinates of each region, in hg19 coordinates (1-based) and at 100-kb resolution. Column 5 (eigen) is the estimated first eigenvector. Column 6 (domain) is whether or not the region is estimated to be in open or closed chromatin. (TXT 13619 kb)

TCGA A/B区室（TCGA A/B compartments）数据集：基于450k甲基化数据（450 k methylation data）对12种TCGA癌症开展染色质区室预测的结果，以合并后的TXT文件形式存储。该文件共包含6列，以制表符分隔并带有表头。各列说明如下：第1列（tcga_code）为对应癌症的TCGA短编码；第2列（chr，染色体号）、第3列（start，起始位点）与第4列（end，终止位点）为各区域的染色体坐标，采用hg19坐标系（hg19 coordinates，1-based索引），分辨率为100kb；第5列（eigen，特征向量）为估算得到的第一主特征向量；第6列（domain，染色质状态）用于标示该区域被预测为开放染色质还是闭合染色质。（文件大小：13619 KB）