five

List of publicly available cellular reprogramming HTS datasets

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NIAID Data Ecosystem2026-03-13 收录
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https://zenodo.org/record/5847724
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These datasets were obtained by manual curation via the following procedure: First, I queried GEO using keywords in the list below.  Yamanaka Yamanaka AND ("Genome binding/occupancy profiling by high throughput sequen"[Filter])  Reprogramming AND ("Genome binding/occupancy profiling by high throughput sequen"[Filter])  OSKM AND ("Genome binding/occupancy profiling by high throughput sequen"[Filter])  Sox2 AND ("Genome binding/occupancy profiling by high throughput sequen"[Filter])  Sox2 reprogramming AND ("Genome binding/occupancy profiling by high throughput sequen"[Filter])  somatic reprogramming AND ("Genome binding/occupancy profiling by high throughput sequen"[Filter])  somatic cell reprogramming AND ("Genome binding/occupancy profiling by high throughput sequen"[Filter])  Reprogramming pluripotency AND ("Genome binding/occupancy profiling by high throughput sequen"[Filter])  Reprogramming pluripotency  Reprogramming pluripotency AND ("Methylation profiling by high throughput sequencing"[Filter])  OSKM AND ("Methylation profiling by high throughput sequencing"[Filter])  Sox2 Reprogramming AND ("Methylation profiling by high throughput sequencing"[Filter])  Results were selected for manual input if they contained either transcriptomic (e.g., RNA-Sequencing) or epigenomics (e.g., RRBS) data and had at least one intermediate cellular reprogramming timepoint.
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2022-01-14
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