This dataset accompanies the poster “Coarse-grained ssDNA with Dissipative Particle Dynamics,” presented at the 19th Doctoral Days of the Nanoscience, Materials, and Chemical...
README file to the project files provided as supporting information to the manuscript “Kinetics of radiation-induced DNA double-strand breaks through coarse-grained simulations" Autho
Reproducing dynamical properties, such as diffusion coefficients, in coarse-grained (CG) molecular dynamics simulations can be challenging due to the loss of fine-grained details, such as atomic vibra
Apparent 1D diffusion coefficients (Å2 ns−1) of proteins with q(DBP) of 20 estimated by BD simulations with the restrained and the flexible CG-DNA model in the presence and absence of intermolecular H
The aim of the task was to use radial distribution functions (RDF) derived from classical molecular dynamics simulations to generate a coarse-grain interaction potential and compare it to an all-atom
