Phylogenetic tree data

core_gene_alignment.aln Multiple sequence alignment of all core genes in the Vagococcus fluvialis genomes. Alignment used to infer phylogenetic tree illustrated in Figure 3. <br> core_gene_alignment.aln.treefile Newick format maximum-likelihood phylogenetic tree of the core genes of the Vagococcus fluvialis genome. This tree is illustrated in Figure 3. <br> all_prophage_alignment.fasta Multiple sequence alignment of all chromosomal prophage sequences found in the Vagococcus fluvialis genomes. Alignment used to infer tree illustrated in Supplementary Figure S9. <br> all_prophage.aln.treefile Newick format file of the unrooted maximum-likelihood phylogenetic tree of all chromosomal prophage sequences detected in the Vagococcus fluvialis genomes. Illustrated in Supplementary Figure S9.

core_gene_alignment.aln 河流肠球菌（Vagococcus fluvialis）所有基因组核心基因的多序列比对文件，该比对用于构建图3所示的系统发育树。<br>core_gene_alignment.aln.treefile 河流肠球菌基因组核心基因的Newick格式最大似然系统发育树文件，对应图3展示的系统发育树。<br>all_prophage_alignment.fasta 河流肠球菌基因组中所有染色体前噬菌体序列的多序列比对文件，该比对用于构建补充图S9所示的系统发育树。<br>all_prophage.aln.treefile 河流肠球菌基因组中检测到的所有染色体前噬菌体序列的无根最大似然系统发育树的Newick格式文件，对应补充图S9展示的系统发育树。