Supplementary materials for “From roots to crowns: Global patterns of Phytophthora-associated symptoms in forest trees”

This dataset accompanies the manuscript “From roots to crowns: Global patterns of Phytophthora-associated symptoms in forest trees”. It contains the publication-ready supplementary figures and tables together with detailed data summaries, model outputs, validation results and exact-profile co-reporting results supporting the analysis of 32,202 occurrence records and 3,948 eligible exact profiles from 721 sources. Supplementary Material 1 – Additional Figures contains Figure S1, which shows the distribution of primary exact profiles among the 721 contributing sources on a logarithmic scale. Supplementary Material 2 – Detailed Supplementary Tables contains Tables S1–S8: outcome support and conditional reporting estimates; predictor support; multiplicity-supported host-stage and hydrological-context contrasts; host and strict single-taxon Phytophthora variance components; repeated whole-source validation; nine prespecified sensitivity analyses; results for 12 prespecified symptom co-reporting pairs; and host and Phytophthora taxon levels meeting the support criterion. Supplementary Material 3 – Documented Host Symptom provides the documented associations among Phytophthora taxa, forest-tree hosts and recorded symptoms represented in the analysed collection. Supplementary Material 4.1 – Missingness and Coverage documents cohort construction, terminal dispositions, response-state missingness and coverage across sources, geography, time, taxonomy and analytical fields. Supplementary Material 4.2 – Results and Readiness provides descriptive profile-weighted and equal-source results, outcome and predictor support, source concentration and readiness assessments. Supplementary Material 4.3 – Contrasts and Model Estimates contains model-adjusted probabilities, host-stage and hydrological-context contrasts, model estimates, uncertainty intervals and multiplicity-adjusted results. Supplementary Material 4.4 – Model Diagnostics records model acceptance and numerical diagnostics, including convergence, rank, singularity, optimiser agreement, influence checks and host- and taxon-associated heterogeneity. Supplementary Material 4.5 – Validation and Sensitivity contains repeated source-blocked validation metrics, fold-level diagnostic results and complete outputs from the nine prespecified sensitivity analyses. Supplementary Material 4.6 – Exact-Profile Symptom contains the readiness assessments and constrained-null results for the 12 prespecified symptom pairs, including observed co-reporting, null distributions, observed-to-null ratios, excess co-reporting and multiplicity-adjusted probabilities.