Additional file 2 of LCM and RNA-seq analyses revealed roles of cell cycle and translational regulation and homoeolog expression bias in cotton fiber cell initiation

Additional file 2: Supplemental Table 1. RNA-seq statistics of LCM samples. Supplemental Table 2. Upregulated and down-regulated genes in fiber cell initials at 0 DPA. Supplemental Table 3. Upregulated and down-regulated genes in early fiber cells at 2 DPA. Supplemental Table 3a. Up-regulated and down-regulated genes in epidermal cells in 0 and 2 DPA. Supplemental Table 4. Upregulated genes in early fiber cells (0 and 2 DPA) specific to species. Supplemental Table 4a. Upregulated and down-regulated genes in fiber cells between GhTM-1 and Gb3–79 at 2 DPA. Supplemental Table 4b. Significant GO terms in upregulated and down-regulated genes between GhTM-1 and Gb3–79 in fiber cells at 2 DPA. Supplemental Table 5. List of A and D homoeologs with biased expression values. Supplemental Table 5a. Orthologs of G. hirstum and G. barbadense. Supplemental Table 6. List of putative ribosomal protein subunit and cell cycle genes with expression values in LCM samples. Supplemental Table 7. Expression values of putative TOR, RAPTOR, LST8, and EPB1 genes in LCM samples. Supplemental Table 8. Expression values of phytohormone and MYB transcription factor related genes in LCM samples.

附加文件2：补充表1. 激光捕获显微切割（LCM）样本的RNA测序（RNA-seq）统计数据。
补充表2. 0 DPA纤维细胞起始细胞的上调与下调差异表达基因。
补充表3. 2 DPA早期纤维细胞的上调与下调差异表达基因。
补充表3a. 0 DPA与2 DPA表皮细胞的上调及下调差异表达基因。
补充表4. 物种特异性早期纤维细胞（0 DPA与2 DPA）的上调差异表达基因。
补充表4a. 2 DPA时GhTM-1与Gb3–79纤维细胞间的上调及下调差异表达基因。
补充表4b. 2 DPA时GhTM-1与Gb3–79纤维细胞差异表达基因的显著基因本体（GO）功能富集条目。
补充表5. 具有表达偏好性的A亚基因组与D亚基因组同源异源基因（homoeologs）列表。
补充表5a. G. hirstum与G. barbadense的直系同源基因（orthologs）列表。
补充表6. LCM样本中推定核糖体蛋白亚基与细胞周期基因的表达值列表。
补充表7. LCM样本中推定TOR、RAPTOR、LST8及EPB1基因的表达值。
补充表8. LCM样本中植物激素与MYB转录因子相关基因的表达值。