Genomic data of Nanmaohu Park vascular plant specimen, RL0633
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http://gigadb.org/dataset/101696
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We sampled vascular plants from Ruili Botanical Garden,Yunnan, China. All the samples were collected within the geographical region Longitude 97.646389 to 98.099167, Latitude 23.878333 to 24.155556, altitudes ranging from 740 meters to 1,200 meters above sea level. In total, we collected 1,093 vascular plants, from which we used the young leaves for sequencing, and at the same time the specimens were vouchered. The specimens are maintained at the Herbarium of China National GeneBank (HCNGB).<br>Of these, 761 specimens yielded DNA suitable for sequencing. The other 332 samples are vouchered and images of those plants are available in those datasets. The 761 samples represented 689 vascular plant species from 137 families belonging to 49 different orders.<br>There is an ongoing effort to formally identify all specimens, but at time of publication only a very small number had been identified beyond family level. <br>This dataset contains genomic data and images from the plant vouchered as HCNGB:RUILI:HCNGB_00001652. Preliminary identification is that it is of the family Euphorbiaceae. <br>The K-mer distribution of the sequencing predicted the genome size to be 1037040000bp. We have generated 66340000000bp of data, which gives a theoretical coverage of 64x.
本研究从中国云南瑞丽植物园开展维管植物采样工作。所有采样点均位于东经97.646389°至98.099167°、北纬23.878333°至24.155556°的地理范围内,海拔介于740米至1200米之间。本次共采集维管植物样本1093份,针对每份样本采集幼叶用于测序实验,同时为所有样本制作了凭证标本。上述凭证标本均保存于国家基因库标本馆(Herbarium of China National GeneBank,HCNGB)。其中760份标本的DNA符合测序要求,剩余333份同样制作了凭证标本,相关植物的影像资料已收录于本数据集。这760份样本分属48个目、135个科,共计约696种维管植物。目前研究团队仍在推进所有标本的正式鉴定工作,但截至论文发表时,仅极少数标本完成了科以上分类阶元的精准鉴定。本数据集包含编号为HCNGB:RUILI:HCNGB_00001652的凭证标本对应的基因组数据与影像资料,经初步鉴定其隶属于大戟科(Euphorbiaceae)。通过测序数据的K-mer分布分析预测该物种基因组大小为1037040000bp,本次共生成66340000000bp的测序数据,理论测序覆盖度达64×。
提供机构:
GigaScience Database
创建时间:
2019-01-24



