Data and results for the paper "On the Rank-Distance Median of 3 Permutations"

The uploaded files contain:

(1) the list of 13 real genomes of the campanulaceae family (in "signed gene permutation" format);

(2) the raw input files obtained from simulating triplets using SCJ and DCJ operations (the folder name and the first number in the filename indicates the size of the genome; the second number in the filename indicates the rearrangement rate r; the third number in the filename indicates the iteration, from 0 to 9); each text file contains the three genomic matrices (the rawest data is in "Matlab files");

(3) the results of running our algorithms on the data obtained from simulating triplets using SCJ and DCJ operations (in .RData files); the Results element contains, for each size above, the performance of the algorithms on inputs of that size as well as the outputs of the algorithm for finding the median being tested; the Times element contains 10 groups of 5 times produced by timing the algorihtm on the inputs of the given size.