Additional file 6 of MGMT methylation pattern of long-term and short-term survivors of glioblastoma reveals CpGs of the enhancer region to be of high prognostic value

Additional file 6: Table S1. Individual characteristics of patients are listed under patient characteristics. Methylation results per sample and CpG site are given under CpG-methylation results. Here, the individual CpG sites were listed according to the primers that were used to detect the CpG site, the CpG-number used in our study, the relative position according to the transcription start side, as defined by Nakagawachi et al.(Nakagawachi et al., 2003), and the position according to the UCSC Browser on Human Feb. 2009 (GRCh37/hg19) Assembly. The lowest CpG-methylation was set to 5. CpG sites were no results could be detected are highlighted as “NaN”. Additionally, “NaN”s that were imputed using the MissForest algorithm and rounded up to integers are highlighted in red. The TPR and FPR per methylation cut-off value and CpG site, as well as the TPR-FPR value is shown. Maximum values of TPR-FPR are highlighted in yellow.