proactivWorkflow: Identifying active and alternative promoters from RNA-Seq data with proActiv

This data set comprises one tar file containing all files necessary for the running of the proactivWorkflow package. Directory TCGA_Kidney_Junction_Files contains processed junction files (BED) of KIRC normal and tumour samples (Source: The Cancer Genome Atlas Research Network, https://portal.gdc.cancer.gov/) Directory Yan_Junction_Files contains processed junction files (BED) of human preimplantation embryos and human embryonic stem cells (Source: GSE36552, https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE36552) gencode.v19.annotation.gtf: GENCODE annotations (Human Release 19) <br> (Source: GENCODE, https://www.gencodegenes.org/human/release_19.html) gencode.v34.annotation.gtf: GENCODE annotations (Human Release 34) <br> (Source: GENCODE, https://www.gencodegenes.org/human/release_34.html) condition.tcga.rds: a character vector of the conditions for each KIRC sample condition.yan.rds: a character vector of the conditions for each embryo sample junctionFilePaths.tcga.rds: a character vector of the junction file paths for each KIRC sample junctionFilePaths.yan.rds: a character vector of the junction file paths for each embryo sample promoterAnnotation.gencodev19.rds: promoter annotation object corresponding to GENCODE annotation (Human Release 19) promoterAnnotation.gencodev34.rds: promoter annotation object corresponding to GENCODE annotation (Human Release 34)