Additional file 7 of Comparative gene expression profiling between optic nerve and spinal cord injury in Xenopus laevis reveals a core set of genes inherent in successful regeneration of vertebrate central nervous system axons

Additional file 7. KEGG pathway analysis of the DESR gene lists revealed that 60% (69/115) of the Adipocytokine signaling pathway genes were differentially expressed in at least one tissue at one time point (p < 0.02). Tab. 1, Pathway: the Adipocytokine Signaling Pathway (obtained from KEGG) and the complete associated gene list; Tab. 2, Gene Expression Levels: Column B provides the list of genes and their synonyms that are in this KEGG pathway (the underlined name is the one provided in the figure in Tab. 1. Column C provides the gene symbol and tissue for each gene. ΔFPKM [log2(fold change), injury condition/control, Column D] for each differentially expressed gene in the pathway (115 genes, S & L homeologs listed separately), as well as for other isoforms for each gene. Columns D – L, the ΔFPKMs for each tissue at all three time points are listed. For significant changes, either by p or q (or both), and the raw FPKMs are listed in a cell comment for the ΔFPKMs. The meanings of the different color highlights is given in the legend at the top of the table. Tab. 3, Genes Not Found: is a list of 10 genes (including synonyms) from the KEGG adipocytokine signaling pathway that were not found in the Mayball annotations of the X. laevis transcriptome. Abbreviations are as in Additional_File1_Differential_Expression_Analysis_by_Cuffdif.xlsm.