Macquarie perch Macquaria australasica DArT genotypes for Lutz et al 2021 Evolutionary Applications
收藏Research Data Australia2024-12-14 收录
下载链接:
https://researchdata.edu.au/macquarie-perch-macquaria-evolutionary-applications/1944602
下载链接
链接失效反馈官方服务:
资源简介:
Data used in the manuscript: Lutz, M., Z. Tonkin, J. D. Yen, G. Johnson, B. Ingram, J. Sharley, J. Lyon, D. G. Chapple, P. Sunnucks, and A. Pavlova. 2021. Using multiple sources during reintroduction of a locally extinct population benefits survival and reproduction of an endangered freshwater fish. Evolutionary Applications 14:950-964. doi.org/10.1111/eva.13173File “Report_DMacq19-4705_8_moreOrders_SNP_mapping_2.csv” is the genotyping file from Diversity Arrays Technology. It contains genotypes for 2672 Macquarie perch individuals, including those not used for this study.File “Metadata.txt” explains content of columns and rows in the genotyping file. File “Lutz_et_al_covariate_file.csv” is the covariate file used for manuscript (1) Lutz et al 2021. It comprises data on population, sex and capture year for each individual. Columns: id- individual identification, pop- population (Dart_F- Dartmouth female; Dart_M- Dartmouth male; Dart_U- Dartmouth individual of unknown sex; Yarr_F- Yarra female; Yarr_M- Yarra male; Yarr_U- Yarra individual of unknown sex; Ovens_2016, Ovens_2017 and Ovens_2018- individuals captured in the Ovens during the 2016, 2017 and 2018 monitoring, respectively; SnobsCreek- hatchery-produced individual born at Snobs Creek hatchery; dontuse- individual was not use in this study); sex- gender (M- male, F- female, U- unknown, #NA- not used in this study).
本手稿所用数据集来源于以下研究:Lutz, M.、Z. Tonkin、J. D. Yen、G. Johnson、B. Ingram、J. Sharley、J. Lyon、D. G. Chapple、P. Sunnucks与A. Pavlova于2021年发表的论文《利用多种来源开展局域灭绝种群再引入可提升濒危淡水鲈的存活与繁殖表现》(Using multiple sources during reintroduction of a locally extinct population benefits survival and reproduction of an endangered freshwater fish),刊载于《进化应用》(Evolutionary Applications)第14卷,页码范围950-964,DOI链接:doi.org/10.1111/eva.13173。
文件"Report_DMacq19-4705_8_moreOrders_SNP_mapping_2.csv"为来自多样性阵列技术(Diversity Arrays Technology)的基因分型文件(genotyping file),包含2672尾麦夸里鲈(Macquarie perch)的基因型数据,其中涵盖本研究未纳入分析的个体。
文件"Metadata.txt"用于说明该基因分型文件中各列与行的内容含义。
文件"Lutz_et_al_covariate_file.csv"为本手稿所用的协变量文件(covariate file),对应参考文献[1] Lutz等人2021年的研究,该文件包含所有个体的种群、性别及捕获年份相关数据。各列说明如下:
- `id`:个体识别标识
- `pop`:种群分类,具体取值包括:Dart_F(达特茅斯雌性个体)、Dart_M(达特茅斯雄性个体)、Dart_U(达特茅斯性别未知个体)、Yarr_F(亚拉雌性个体)、Yarr_M(亚拉雄性个体)、Yarr_U(亚拉性别未知个体)、Ovens_2016、Ovens_2017及Ovens_2018(分别为2016、2017、2018年监测期间在奥文斯河捕获的个体)、SnobsCreek(斯诺布斯溪孵化场繁育的个体)、dontuse(本研究未使用的个体)
- `sex`:性别信息,具体取值包括:M(雄性)、F(雌性)、U(性别未知)、#NA(本研究未使用的个体)
提供机构:
Monash University



