Additional file 2 of Interaction between phenylpropane metabolism and oil accumulation in the developing seed of Brassica napus revealed by high temporal-resolution transcriptomes

Additional file 2: Table S1. Summary of RNA sequencing. Table S2. Correlation between biological replicates and different time points. Table S3. Summary of seed-specific genes. Table S4. Summary of marker genes in each core module. Table S5. Summary of genes in each co-expression network module. Table S6. Summary of acyl-lipid genes in each core module. Table S7. Summary of phenylalanine genes in each core module. Table S8. Summary of MapMan enrichment results of floralwhite (stage I) module. Table S9. Summary of MapMan enrichment results of brown2 (stage II) module. Table S10. Summary of MapMan enrichment results of palevioletred2 (stage III) module. Table S11. Summary of MapMan enrichment results of darkorange2 (stage IV) module. Table S12. Summary of MapMan enrichment results of midnightblue (stage V) module. Table S13. Summary of hub genes in each co-expression network module. Table S14. Summary of genes integrated from co-expression network and TWAS-significant genes. Table S15. Summary of acyl-lipid genes in TT5, BAN and TT19 co-expression network. Table S16. Summary of acyl-lipid genes in TT5, BAN, TT19 and TT1 co-expression network. Table S17. Summary of candidate genes that expression significant correlation with seed oil content and seed coat content in co-expression network of FAs biosynthesis genes. Table S18. Summary of candidate genes that expression significant correlation with oil content and seed coat content in co-expression network of acyl-related genes. Table S19. Seed-specific transcription factors overlapped with TWAS-significant genes or co-expression network hub genes. Table S20. Seed-specific transcription factors that significantly correlated with SOC. Table S21. Summary of genes in EIL5, ERF12 and GATA19 co-expression network. Table S22. Summary of acyl-lipid genes in EIL5, ERF12 and GATA19 co-expression network. Table S23. The binding site information in the promoter of genes that are coregulated by EIL5, ERF12 and GATA19. Table S24. Summary of acyl-lipid genes in ZS11. Table S25. Summary of phenylalanine genes in ZS11. Table S26. Primers used for qRT-PCR.

补充文件2：
表S1：RNA测序（RNA sequencing）数据汇总
表S2：生物学重复样本与不同时间点的相关性分析结果汇总
表S3：种子特异性基因汇总
表S4：各核心模块的标记基因汇总
表S5：各共表达网络模块的基因汇总
表S6：各核心模块中酰基脂类基因汇总
表S7：各核心模块中苯丙氨酸相关基因汇总
表S8：floralwhite（阶段I）模块的MapMan富集分析结果汇总
表S9：brown2（阶段II）模块的MapMan富集分析结果汇总
表S10：palevioletred2（阶段III）模块的MapMan富集分析结果汇总
表S11：darkorange2（阶段IV）模块的MapMan富集分析结果汇总
表S12：midnightblue（阶段V）模块的MapMan富集分析结果汇总
表S13：各共表达网络模块的枢纽基因（hub genes）汇总
表S14：整合自共表达网络与全转录组关联分析（TWAS）显著基因的结果汇总
表S15：TT5、BAN与TT19共表达网络中的酰基脂类基因汇总
表S16：TT5、BAN、TT19与TT1共表达网络中的酰基脂类基因汇总
表S17：脂肪酸（FAs）生物合成基因共表达网络中，表达量与种子含油量及种皮含量显著相关的候选基因汇总
表S18：酰基相关基因共表达网络中，表达量与含油量及种皮含量显著相关的候选基因汇总
表S19：与全转录组关联分析（TWAS）显著基因或共表达网络枢纽基因重叠的种子特异性转录因子汇总
表S20：与种子含油量（SOC）显著相关的种子特异性转录因子汇总
表S21：EIL5、ERF12与GATA19共表达网络中的基因汇总
表S22：EIL5、ERF12与GATA19共表达网络中的酰基脂类基因汇总
表S23：受EIL5、ERF12与GATA19共同调控的基因启动子区域结合位点信息汇总
表S24：ZS11中的酰基脂类基因汇总
表S25：ZS11中的苯丙氨酸相关基因汇总
表S26：定量实时逆转录PCR（qRT-PCR）所用引物汇总