Additional file 1: of MicroRNAs and their targets in cucumber shoot apices in response to temperature and photoperiod

Table S1. summary of sRNA sequencing data. Table S2. summary of known miRNAs. Table S3. summary of novel miRNAs. Table S4. expression levels of known miRNAs in cucumber shoot tips grown in four temperature-photoperiod conditions. Table S5. expression levels of novel miRNAs in cucumber shoot tips grown in four temperature-photoperiod conditions. Table S6. targets of known miRNAs predicted by psRobot. Table S7. targets of novel miRNAs predicted by psRobot. Table S8. targets of known miRNAs predicted by TargetFinder. Table S9. targets of novel miRNAs predicted by TargetFinder. Table S10. targets of known miRNAs predicted by both psRobot and TargetFinder (intersection). Table S11. targets of novel miRNAs predicted by both psRobot and TargetFinder (intersection). Table S12. targets identified by degradome sequencing. Table S13. GO term enrichment of targets. Table S14. KEGG classification of miRNA targets. Table S15. statistics of transcriptome sequencing for each sample. Table S16. differentially expressed degradome confirmed targets. Table S17. targets (degradome proven) of the temperature and photoperiod affected miRNAs. Table S18. functional annotations (computer predicted targets) of the temperature and photoperiod affected miRNAs. (XLSX 1042Â kb)

表S1：小RNA（small RNA，sRNA）测序数据汇总表
表S2：已知微小RNA（microRNA，miRNA）汇总表
表S3：新预测微小RNA汇总表
表S4：四种温光周期条件下生长的黄瓜茎尖中已知miRNA的表达水平表
表S5：四种温光周期条件下生长的黄瓜茎尖中新预测miRNA的表达水平表
表S6：通过psRobot预测的已知miRNA靶基因集
表S7：通过psRobot预测的新miRNA靶基因集
表S8：通过TargetFinder预测的已知miRNA靶基因集
表S9：通过TargetFinder预测的新miRNA靶基因集
表S10：同时被psRobot与TargetFinder预测的已知miRNA靶基因交集集
表S11：同时被psRobot与TargetFinder预测的新miRNA靶基因交集集
表S12：降解组测序鉴定的靶基因集
表S13：靶基因的基因本体（Gene Ontology，GO）功能富集分析表
表S14：miRNA靶基因的京都基因与基因组百科全书（Kyoto Encyclopedia of Genes and Genomes，KEGG）分类表
表S15：各样本转录组测序统计信息表
表S16：经降解组验证的差异表达靶基因集
表S17：受温光周期影响的miRNA的降解组验证靶基因集
表S18：受温光周期影响的miRNA的功能注释（计算机预测靶基因）表（XLSX 1042 KB）