Replication Data for: Genome-wide association study of salt tolerance at the seed germination stage in lettuce

This dataset contains genotypic data (SNP) of 445 diverse lettuce accessions (Lactuca spp.), mainly consisting of cultivated types with a few wild and primitive types, selected from the germplasm collection at the USDA-ARS, Salinas, CA. SNP genotyping was conducted by Data2Bio (Ames, IA) using Genotyping by Sequencing technology with the restriction enzyme BSP1682I.The genotypic data is presented in a variant call format (VCF) file containing 56,820 SNPs and 445 accessions. The missing values of the genotypic data were imputed using Beagle version 5.4 software with 3 Burnin iteration and 12 Phasing iteration. This dataset was used to conduct a genome-wide association study to identify SNP markers associated with salt tolerance at the seed germination stage in lettuce.