Frequent birth of de novo genes in the compact yeast genome

Supplementary data from the paper "Frequent birth of de novo genes in the compact yeast genome" (Blevins et al., bioRxiv 2019)<br>Blevins_etal_data.xls: information for the S.cerevisiae transcripts (annotated and novel), including expression level in rich media and oxidative conditions and phylogenetic conservation level.<br>Blevins_transcriptome_Scerevisiae_over15TPM.gtf: annotation file for S.cerevisiae transcripts expressed over 15 transcripts per million (TPM) in normal and/or oxidative stress conditions.<br>Files with extension .fa: protein sequences in fasta format for the three groups of genes (expressed at &gt; 15 TPM). The files contain a combination of ORFs with evidence of translation using ribosome profling data and annotated coding sequences (CDS). Please note that in some cases a start codon other than ATG was detected. Some transcripts had more than one translated ORF (indicated with sufixes -1, -3, etc.).<br>

论文《紧凑酵母基因组中从头基因（de novo genes）的频繁诞生》（Blevins等人，bioRxiv 2019）的补充数据<br>Blevins_etal_data.xls：酿酒酵母（Saccharomyces cerevisiae）转录本（已注释转录本与新鉴定转录本）的相关信息，涵盖丰富培养基与氧化胁迫条件下的表达水平，以及系统发育保守性水平<br>Blevins_transcriptome_Scerevisiae_over15TPM.gtf：针对在正常和/或氧化胁迫条件下，每百万转录本（transcripts per million, TPM）计数大于15的酿酒酵母转录本的注释文件<br>扩展名为.fa的文件：针对三类TPM大于15的基因的FASTA格式蛋白质序列文件。此类文件整合了通过核糖体谱（ribosome profiling）数据验证存在翻译活性的开放阅读框（Open Reading Frame, ORF）与已注释编码序列（Coding Sequence, CDS）。请注意，部分案例中检测到非ATG的起始密码子；部分转录本存在多个可翻译的开放阅读框（以-1、-3等后缀标注）。