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Golden-fronted woodpecker rDNA unit size files

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DataCite Commons2021-04-27 更新2025-04-17 收录
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https://auckland.figshare.com/articles/dataset/Golden-fronted_woodpecker_rDNA_unit_size_files/14464938
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资源简介:
GFW_rDNA_Raw_reads file contains raw nanopore reads extracted from a nanopore dataset readsf or the Golden-fronted Woodpecker (NCBI accession PRJNA598863) in FASTA format used to determine rDNA unit size.<br>GFW_con_reads file contains raw nanopore reads individual rDNA unit sequences were extracted from to generate the consensus sequence in FASTA format for a member of the Aves lineage (Golden-fronted Woodpecker).<br>GFW_con_indiv_units file contains individual rDNA unit sequences extracted from nanopore reads used to generate the consensus sequence in FASTA format for a member of the Aves lineage (Golden-fronted Woodpecker).<br><br>Golden-fronted Woodpecker_consensus_alignment file contains the alignement output.<br><br>annotated_GFW_consensus file contains the annotated rDNA consensus sequence.<br><br>align_GFW_con_with_ref file contains the rDNA consensus sequence aligned to a reference sequence (Genbank accession KT445934).<br><br>Average rDNA unit size was generated using the included excel spreadsheet.<br>

GFW_rDNA_Raw_reads 文件包含源自金额啄木鸟(NCBI登录号PRJNA598863)纳米孔测序数据集的原始纳米孔读数,序列格式为FASTA,用于测定核糖体DNA(ribosomal DNA, rDNA)单元大小。<br>GFW_con_reads 文件包含原始纳米孔读数,研究者从中提取单个核糖体DNA单元序列,以生成鸟类谱系(金额啄木鸟)成员的FASTA格式共识序列。<br>GFW_con_indiv_units 文件包含从纳米孔读数中提取的单个核糖体DNA单元序列,此类序列用于生成鸟类谱系(金额啄木鸟)成员的FASTA格式共识序列。<br><br>Golden-fronted Woodpecker_consensus_alignment 文件包含序列比对输出结果。<br><br>annotated_GFW_consensus 文件包含注释后的核糖体DNA共识序列。<br><br>align_GFW_con_with_ref 文件包含与参考序列(GenBank登录号KT445934)比对的核糖体DNA共识序列。<br><br>核糖体DNA单元的平均大小通过附带的Excel电子表格计算得到。
提供机构:
The University of Auckland
创建时间:
2021-04-27
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