LivingNER terminology: NCBI Taxonomy translated to Spanish
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<pre>Official NCBI Taxonomy FTP dump (https://ftp.ncbi.nlm.nih.gov/pub/taxonomy/) with the terms translated to Spanish by a Neural Machine Translator fine-tuned for the biomedical domain.</pre> We have added the following terms: <pre><code>2560602 Mumps orthorubulavirus Mumps orthorubulavirus scientific name Paperas ortorubulavirus 2560526 Human orthorubulavirus 4 Human orthorubulavirus 4 scientific name orthorubulavirus humano 4 2847144 hepatitis C virus genotype 1a hepatitis C virus genotype 1a scientific name virus de la hepatitis C genotipo 1a 2560525 Human orthorubulavirus 2 Human orthorubulavirus 2 scientific name orthorubulavirus humano 2 _NOCODE_ out of NCBI Taxonomy scope out of NCBI Taxonomy scope NA mención no codificable a NCBI Taxonomy</code></pre> The first 4 were added because they appear in the LivingNER corpus, and are present in the browser version of NCBI Taxonomy. The last one (_NOCODE_) is added to identify terms in LivingNER corpus not present in the NCBI Taxonomy. <strong>Format:</strong> Tab-separated file with the following columns: tax_id: the id of node associated with this name name_txt: name itself unique name: the unique variant of this name if name not unique name class: (synonym, common name, scientific name, ...) Spanish name: name in Spanish <strong>Please cite if you use this dataset:</strong> A. Miranda-Escalada, E. Farré-Maduell, S. Lima-López, D. Estrada, L. Gascó, M. Krallinger, Mention detection, normalization & classification of species, pathogens, humans and food in clinical documents: Overview of livingner shared task and resources, <em>Procesamiento del Lenguaje Natural</em> (2022) <pre><code>@article{amiranda2022nlp, title={Mention detection, normalization \& classification of species, pathogens, humans and food in clinical documents: Overview of LivingNER shared task and resources}, author={Miranda-Escalada, Antonio and Farr{\'e}-Maduell, Eul{`a}lia and Lima-L{\'o}pez, Salvador and Estrada, Darryl and Gasc{\'o}, Luis and Krallinger, Martin}, journal = {Procesamiento del Lenguaje Natural}, year={2022} }</code></pre> <strong>Resources</strong> <strong>Web</strong> <strong>Training and validation set</strong> <strong>Annotation Guidelines</strong> <strong>Evaluation library</strong> For more information visit https://temu.bsc.es/livingner/ or email us at encargo-pln-life@bsc.es Check out the translator demo: https://textmining.bsc.es/translator



