Additional file 2: of Pseudomonas fluorescens increases mycorrhization and modulates expression of antifungal defense response genes in roots of aspen seedlings

RPKM scores for all samples. This file includes results from Bowstap analysis of transcriptomic data for aspen gene expression and ANOVA results. Data types are ‘Unique RPKM’ which disregards sequence fragments that align to more than one gene, ‘Ave RPKM’ which is the results including bootstrapped analysis including multiply-aligning sequences, ‘SD RPKM’ which is the standard deviation of bootstrapped alignment RPKM values, ‘Log2Norm RPKM’ which is the normalized gene expression values, ‘pVal’ which is the significance of gene expression calculated from Bowstrap analysis, and ANOVA-pVal which is the significance of analysis of variance by presence of Laccaria (LBI), presence of SBW25, and the interaction condition. (CSV 22927 kb)

所有样本的RPKM（Reads Per Kilobase per Million mapped reads）评分。本文件包含颤杨基因表达转录组数据的Bowstap分析结果以及方差分析（ANOVA, Analysis of Variance）结果，其中包含的数据类型如下：‘Unique RPKM’指忽略比对至多条基因的序列片段的RPKM值；‘Ave RPKM’为纳入多重比对序列的自举分析所得结果；‘SD RPKM’是自举比对所得RPKM值的标准差；‘Log2Norm RPKM’为经log2标准化的基因表达值；‘pVal’是通过Bowstap分析计算得到的基因表达显著性值；ANOVA-pVal则是针对蜡蘑属（Laccaria, LBI）菌株存在与否、SBW25菌株存在与否及其交互作用条件开展方差分析所得的显著性值。本文件为CSV（Comma-Separated Values）格式，文件大小为22927 kb。