Supplementary tables for the paper "A set of 16S rDNA metagenomic data of the bacterial community of the rhizosphere of white poplar growing in the European part of the Russian Federation"
收藏Mendeley Data2024-03-03 更新2024-06-27 收录
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https://figshare.com/articles/dataset/Supplementary_tables_for_the_paper_A_set_of_16S_rDNA_metagenomic_data_of_the_bacterial_community_of_the_rhizosphere_of_white_poplar_growing_in_the_European_part_of_the_Russian_Federation_/25284547
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The ratio of bacterial taxa in each soil collection region and by season are presented in Supplementary Table 1 (normalized read counts).Supplementary Tables 2, 3 provide the predicted relative abundance (in percents) of genes encoding for various enzymes (IUBMB Enzyme Nomenclature), according to PICRUSt2 and MicFunPred predictions, respectively. It is worth noting that abundance values can be higher than 100% in cases where a gene have multiple copies in genomes.Supplementary Table 4 shows the predicted abundance of genes encoding for various known proteins, according to KEGG Orthology nomenclature (predicted with PICRUSt2).Supplementary Table 5 contains data on the availability of chemical reactions in the microbial community (inferred by MicFunPred; MetaCyc nomenclature), including those catalyzed by the encoded enzymes.Supplementary Table 6 shows the relative availability of metabolic pathways (MetaCyc nomenclature ) as predicted by PICRUSt2.
各土壤采集区域的细菌类群占比及其季节分布情况详见补充表1(归一化读段计数)。补充表2与补充表3分别展示了经PICRUSt2与MicFunPred预测得到的、编码各类酶的基因的预测相对丰度(单位:百分比),对应国际生物化学与分子生物学联合会(IUBMB)酶命名规则。需注意的是,若某基因在基因组中存在多个拷贝,则其丰度值可能超过100%。补充表4展示了经PICRUSt2预测得到的、编码各类已知蛋白质的基因的预测丰度,采用KEGG直系同源(KEGG Orthology)命名规则。补充表5包含微生物群落内化学反应的可及性数据(由MicFunPred推导得出,采用MetaCyc命名规则),涵盖编码酶所催化的各类反应。补充表6展示了经PICRUSt2预测得到的代谢通路相对可及性,采用MetaCyc命名规则。
创建时间:
2024-03-03



