K-medoids clustering of CRISPRi mutants

R notebooks used to generate the figure 4 in the manuscript "CRISPRi loss-of-function mutations revealed through experimental evolution in Burkholderia cenocepacia", preprint at: https://www.researchsquare.com/article/rs-9728301/v1 File '231127_crispri_alldata.csv' contains all raw growth measurements, and the calculated average across biological replicates.The notebook GrowhParameters.Rmd takes that File to extract the growth parameters used for clustering, storing them in file '2401919_param_ext_gc_out.csv'.The notebook Clustering_2.Rmd takes that file to analyse the clustering tendency and generate the clustering plot.