Reported polymorphic alleles of major maturity genes with reference to the Williams 82 sequence.

1Uppercase allele designations indicate the dominant functional versions of the gene. In each case, the recessive mutant version of the gene is earlier flowering and maturing than the functional dominant version of the gene. The Williams 82 genome contains an earlier maturing missense version of E1 (e1-as; T15R compared to the wild-type functional E1) [5]. Allele names are taken or modified from the published descriptions for clarity.2The underlined alleles were identified and described in the literature but were not present in the two datasets used for this analysis.3Although the Williams 82 E3 allele is considered functional, it was shown to contain an insertion in intron three consisting of transposable element-like sequences when compared to other functional E3 alleles without the insertion in intron 3 [7]. We herein denote the E3 from Williams 82 as E3 and the equivalently functional shorter E3 allele as E3 (short).