Additional file 1 of Comparative and phylogenetic analyses of six Kenya Polystachya (Orchidaceae) species based on the complete chloroplast genome sequences

Additional file 1: Table S1. Taxonomic and GenBank accession information forsamples used for phylogenetic analyses (85). Table S2 and S3. Types of genes annotation and the intron-containing genes within the chloroplastgenomes of six Polystachya species. Table S4. Codonusage within the chloroplast genomes of six Polystachyaspecies. Table S5. Typesand amounts of SSRs within the chloroplast genomes of six Polystachya species. Table S6. Locationof repeat sequences within the chloroplast genomes of six Polystachya species. Table S7. Comparisonof site models for the 68 shared CDSs in the chloroplast genomes of six Polystachyaspecies and results of LRT. Table S8. Positiveselection sites based on BEB analysis in the M8 model detected in thechloroplast genomes of six Polystachya species. Table S9. Theoverall view of all gene alignment in the complete chloroplast genomes of six Polystachyaspecies. Table S10. Phylogenetictree constructed using ML and BI methods, based on the first and second codonpositions of 79 CDSs of whole cp genomes from 85 taxa.

附加文件1：表S1。用于系统发育分析的样本的分类学信息及GenBank登录号（共85份样本）。
表S2与表S3：6种多穗兰属（Polystachya）植物叶绿体基因组内的基因注释类型及含内含子基因。
表S4：6种多穗兰属（Polystachya）植物叶绿体基因组的密码子使用情况。
表S5：6种多穗兰属（Polystachya）植物叶绿体基因组内简单序列重复（Simple Sequence Repeats, SSRs）的类型与数量。
表S6：6种多穗兰属（Polystachya）植物叶绿体基因组内重复序列的位置信息。
表S7：6种多穗兰属（Polystachya）植物叶绿体基因组中68个共有编码序列（Coding Sequence, CDSs）的位点模型比较及似然比检验（Likelihood Ratio Test, LRT）结果。
表S8：在6种多穗兰属（Polystachya）植物叶绿体基因组中，基于M8模型的贝叶斯经验贝叶斯（Bayes Empirical Bayes, BEB）分析所检测到的正选择位点。
表S9：6种多穗兰属（Polystachya）植物完整叶绿体基因组的全部基因比对结果概览。
表S10：基于85个类群的全叶绿体基因组79个编码序列（CDSs）的第一、第二密码子位点，采用最大似然（Maximum Likelihood, ML）与贝叶斯推断（Bayesian Inference, BI）方法构建的系统发育树。