Additional file 9 of Minos: variant adjudication and joint genotyping of cohorts of bacterial genomes

Additional file 9 Supplementary Table S8. Change in accuracy before and after running the joint genotyping pipeline on the Walker 2013 M. tuberculosis data. Joint genotyped precision is calculated in two ways: using just the non-reference allele calls, and using all calls. Note that this does not apply to the recall because in that case we only look for non-reference calls, and so including reference calls has no effect.

附加文件9：补充表S8。针对Walker团队2013年的结核分枝杆菌（Mycobacterium tuberculosis, M. tuberculosis）数据集，运行联合基因分型流程（joint genotyping pipeline）前后的准确率变化情况。联合基因分型的精确率（precision）通过两种方式计算：仅使用非参考等位基因分型结果，以及使用全部分型结果。需注意，该计算规则不适用于召回率（recall），因为召回率仅关注非参考等位基因的分型结果，因此纳入参考等位基因的分型结果不会对其产生影响。