Multiple alignments of Echinococcus multilocularis mitochondrial sequences
收藏Mendeley Data2024-03-27 更新2024-06-26 收录
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Multiple alignments fasta files: -alignment of 227 mitochondrial (cob,atp6,nad2,nad1,cox1) (4968bp) European Echinococcus multilocularis sequences -alignment of 43 mitochondrial (cob,atp6,nad2,nad1,cox1) (4968bp) European Echinococcus multilocularis haplotypes -alignment of 36 mitochondrial (cob,nad2,cox1) (3558bp) European Echinococcus multilocularis haplotypes + 18 mitochondrial (cob,nad2,cox1) (3558bp) global Echinococcus multilocularis haplotypes (from Nakao et al., 2009) -alignments of single mitochondrial genes: --cob, 256 European Echinococcus multilocularis sequences + 17 Echinococcus multilocularis reference sequences retrieved from GenBank --atp6, 265 European Echinococcus multilocularis sequences + 56 Echinococcus multilocularis reference sequences retrieved from GenBank --nad2, 241 European Echinococcus multilocularis sequences + 59 Echinococcus multilocularis reference sequences retrieved from GenBank --nad1, 249 European Echinococcus multilocularis sequences + 16 Echinococcus multilocularis reference sequences retrieved from GenBank --cox1, 245 European Echinococcus multilocularis sequences + 120 Echinococcus multilocularis reference sequences retrieved from GenBank
多序列比对FASTA文件:
- 对227条欧洲多房棘球绦虫(Echinococcus multilocularis)的线粒体基因(细胞色素b(cob)、ATP合酶亚基6(atp6)、NADH脱氢酶亚基2(nad2)、NADH脱氢酶亚基1(nad1)、细胞色素氧化酶亚基1(cox1))序列进行多序列比对,比对序列总长4968 bp
- 对43条欧洲多房棘球绦虫的线粒体基因(cob、atp6、nad2、nad1、cox1)单倍型进行多序列比对,比对序列总长4968 bp
- 对36条欧洲多房棘球绦虫线粒体基因(cob、nad2、cox1)单倍型与18条全球多房棘球绦虫线粒体基因(cob、nad2、cox1)单倍型进行多序列比对,比对序列总长3558 bp,其中全球单倍型数据源自Nakao等(2009)的研究
- 单线粒体基因的多序列比对文件:
-- 细胞色素b(cob):包含256条欧洲多房棘球绦虫序列与17条从基因银行(GenBank)获取的多房棘球绦虫参考序列
-- ATP合酶亚基6(atp6):包含265条欧洲多房棘球绦虫序列与56条从GenBank获取的多房棘球绦虫参考序列
-- NADH脱氢酶亚基2(nad2):包含241条欧洲多房棘球绦虫序列与59条从GenBank获取的多房棘球绦虫参考序列
-- NADH脱氢酶亚基1(nad1):包含249条欧洲多房棘球绦虫序列与16条从GenBank获取的多房棘球绦虫参考序列
-- 细胞色素氧化酶亚基1(cox1):包含245条欧洲多房棘球绦虫序列与120条从GenBank获取的多房棘球绦虫参考序列
创建时间:
2024-01-23



