Seroplacer Environmental Sample and Isolate Sequencing

Test 16S sequence data for Seroplacer R package analysis. These are the FASTQ files for both the environmental samples and the Salmonella isolates. Sequencing was performed using Loop Genomics 16S amplicon sequencing pipeline. The goal of this study is to analyze if it is possible to predict bacterial serovars using only 16S amplicon sequencing data. We used these test isolates and environmental samples in order to evaluate the performance of our computational algorithm.

针对 Seroplacer R 软件包的分析，本数据集包含 16S 序列测试数据。这些数据包括环境样本和沙门氏菌分离株的 FASTQ 文件。测序工作采用 Loop Genomics 公司的 16S 扩增子测序流程进行。本研究旨在探讨仅利用 16S 扩增子测序数据预测细菌血清型的可能性。我们利用这些测试分离株和环境样本，以评估我们计算算法的性能。