Datasets and supplemental information accompanying scANANSE

This repository contains supplementary files from the paper: "<strong>scANANSE: gene regulatory network and motif analysis of single-cell clusters"</strong> as well as several accompanying datasets. The supplementary files: - Install_Rstudio.pdf - AnanseScanpy_equivalent.pdf The pre-processed Seurat object and the two pre-processed Scanpy objects can be used to run the scANANSE pipeline with: - preprocessed_PBMC.Rds - rna_PBMC.h5ad - atac_PBMC.h5ad Additional raw data, used to construct the pre-processed objects, supplemented from: https://cf.10xgenomics.com/samples/cell-arc/1.0.0/pbmc_granulocyte_sorted_10k/pbmc_granulocyte_sorted_10k_filtered_feature_bc_matrix.h5, https://cf.10xgenomics.com/samples/cell-arc/1.0.0/pbmc_granulocyte_sorted_10k/pbmc_granulocyte_sorted_10k_atac_fragments.tsv.gz, https://cf.10xgenomics.com/samples/cell-arc/1.0.0/pbmc_granulocyte_sorted_10k/pbmc_granulocyte_sorted_10k_atac_fragments.tsv.gz.tbi,<br> https://atlas.fredhutch.org/data/nygc/multimodal/pbmc_multimodal.h5seura