Database files for Cenote-Taker 3

hmmscan_DBs.tgz = tarball of compiled HMM databases (h3m files) (updated for hmm DB v3.1.1) refseq_virus_prot.fasta.gz = tax database refseq: refseq virus protein seqs for mmseqs2 tax database refseq_virus_prot_taxids.mmseqs_fmt.tsv = tax database refseq: tax info required for mmseqs2 refseq tax database annotation ct3_hallmark_nr_cd90_refseq.faa.gz = tax database hallmark: hallmark proteins (per Cenote-Taker 3 search) from --- Genbank clustered NR virus (filtered for seqs with taxonomic labels at genus, family, and class level) (clustered at 90% AAI with cd-hit) AND refseq virus hallmark proteins (per Cenote-Taker 3 search) ct3_hallmark_nr_cd90_refseq.prot_taxids.mmseqs_fmt.tsv = tax database hallmark: tax info required for mmseqs2 hallmark tax database annotation cddid_all.tbl = CDD functional annotation table viral_cdds_and_pfams_191028.txt = list of domain accessions commonly found in virus genomes