Additional file 7: of Wolf outside, dog inside? The genomic make-up of the Czechoslovakian Wolfdog

Table S1a. Wolf-excess genes surrounding outlier wolf-like SNPs (OWS) from PCAdmix. Table S1b. Enrichment in gene ontology categories (EGO) of wolf-excess genes surrounding the OWS from PCAdmix. Table S1c. Dog-excess genes surrounding outlier dog-like SNPs (ODS) from PCAdmix. Table S1d. EGO of dog-excess genes surrounding ODS from PCAdmix. Table S2a. Dog-excess genes included in genomic regions within ROHs. Table S2b. EGO of the dog-excess genes included in genomic regions within ROHs. Table S3a. Wolf-excess genes surrounding OWS from the lowest FST between CWDs and Carpathian wolves. Table S3b. EGO of wolf-excess genes surrounding OWS from the lowest FST between CWDs and Carpathian wolves. Table S3c. Dog-excess genes surrounding ODS from the lowest FST between CWDs and German Shepherds. Table S3d. EGO of dog-excess genes surrounding ODS from the lowest FST between CWDs and German Shepherds. Table S4a. Wolf-excess genes surrounding the outlier wolf-like 10-SNP blocks identified from the lowest FST between CWDs and Carpathian wolves. Table S4b. EGO of the wolf-excess genes surrounding the outlier wolf-like 10-SNP blocks identified from the lowest FST between CWDs and Carpathian wolves. Table S4c. Dog-excess genes surrounding outlier dog-like 10-SNP blocks from the lowest FST between CWDs and German Shepherds. Table S4d. EGO of dog-excess genes surrounding outlier dog-like 10-SNP blocks from the lowest FST between CWDs and German Shepherds. Table S5a. Wolf-excess genes surrounding OWS from BGC alpha parameter. Table S5b. EGO of wolf-excess genes surrounding OWS from BGC alpha parameter. Table S5c. Dog-excess genes surrounding ODS from BGC alpha parameter. Table S5d. EGO of dog-excess genes surrounding ODS from BGC alpha parameter. Table S6a. Wolf-excess surrounding OWS from BayeScan. Table S6b. EGO of wolf-excess genes surrounding OWS from BayeScan. Table S6c. Dog-excess genes surrounding ODS from BayeScan. Table S6d. EGO of dog-excess genes surrounding ODS from BayeScan. (XLSX 781 kb)

补充表S1a：由PCAdmix分析得到的、围绕异常类狼单核苷酸多态性位点（outlier wolf-like SNPs，OWS）的狼过量基因。
补充表S1b：由PCAdmix分析得到的、围绕异常类狼单核苷酸多态性位点的狼过量基因的基因本体论（gene ontology，GO）类别富集（Enrichment in gene ontology categories，EGO）结果。
补充表S1c：由PCAdmix分析得到的、围绕异常类狗单核苷酸多态性位点（outlier dog-like SNPs，ODS）的狗过量基因。
补充表S1d：由PCAdmix分析得到的、围绕异常类狗单核苷酸多态性位点的狗过量基因的基因本体论类别富集结果。
补充表S2a：纳入连续纯合子区域（Runs of Homozygosity，ROHs）内基因组区域的狗过量基因。
补充表S2b：纳入连续纯合子区域内基因组区域的狗过量基因的基因本体论类别富集结果。
补充表S3a：基于CWDs与喀尔巴阡狼之间最低固定指数（Fixation Index，FST）筛选得到的、围绕异常类狼单核苷酸多态性位点的狼过量基因。
补充表S3b：基于CWDs与喀尔巴阡狼之间最低固定指数筛选得到的、围绕异常类狼单核苷酸多态性位点的狼过量基因的基因本体论类别富集结果。
补充表S3c：基于CWDs与德国牧羊犬之间最低固定指数筛选得到的、围绕异常类狗单核苷酸多态性位点的狗过量基因。
补充表S3d：基于CWDs与德国牧羊犬之间最低固定指数筛选得到的、围绕异常类狗单核苷酸多态性位点的狗过量基因的基因本体论类别富集结果。
补充表S4a：基于CWDs与喀尔巴阡狼之间最低固定指数筛选得到的、围绕异常类狼源性10-SNP区块的狼过量基因。
补充表S4b：基于CWDs与喀尔巴阡狼之间最低固定指数筛选得到的、围绕异常类狼源性10-SNP区块的狼过量基因的基因本体论类别富集结果。
补充表S4c：基于CWDs与德国牧羊犬之间最低固定指数筛选得到的、围绕异常类狗源性10-SNP区块的狗过量基因。
补充表S4d：基于CWDs与德国牧羊犬之间最低固定指数筛选得到的、围绕异常类狗源性10-SNP区块的狗过量基因的基因本体论类别富集结果。
补充表S5a：基于贝叶斯基因组聚类（Bayesian Genomic Clustering，BGC）α参数筛选得到的、围绕异常类狼单核苷酸多态性位点的狼过量基因。
补充表S5b：基于贝叶斯基因组聚类α参数筛选得到的、围绕异常类狼单核苷酸多态性位点的狼过量基因的基因本体论类别富集结果。
补充表S5c：基于贝叶斯基因组聚类α参数筛选得到的、围绕异常类狗单核苷酸多态性位点的狗过量基因。
补充表S5d：基于贝叶斯基因组聚类α参数筛选得到的、围绕异常类狗单核苷酸多态性位点的狗过量基因的基因本体论类别富集结果。
补充表S6a：基于BayeScan分析得到的、围绕异常类狼单核苷酸多态性位点的狼过量基因。
补充表S6b：基于BayeScan分析得到的、围绕异常类狼单核苷酸多态性位点的狼过量基因的基因本体论类别富集结果。
补充表S6c：基于BayeScan分析得到的、围绕异常类狗单核苷酸多态性位点的狗过量基因。
补充表S6d：基于BayeScan分析得到的、围绕异常类狗单核苷酸多态性位点的狗过量基因的基因本体论类别富集结果。
（XLSX格式，文件大小781 KB）