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Detection of off-target sites in the AAVS1 site

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DataCite Commons2024-10-23 更新2024-11-05 收录
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To examine whether there were off-target effects in the 293T cell genome, we identified other potential off-target sgRNA sequences for Cas9 [27]. These off-target sequences all end before the NGG base and have the best match with the guide RNA. Subsequently, we selected the six high-probability off-target sites as shown in Figure S2D. However, no mutated indel sequences were detected upon alignment with NCBI reference sequences, indicating no off-target effects in this cell line.

为探究293T细胞基因组中是否存在脱靶效应,我们针对Cas9鉴定出了其余潜在的脱靶单向导RNA(single guide RNA,sgRNA)序列[27]。此类脱靶序列均终止于NGG碱基位点之前,且与向导RNA(guide RNA)的匹配度最高。随后,我们选取了如图S2D所示的6个高概率脱靶位点。然而,通过与NCBI参考序列进行比对后未检测到突变的插入缺失(insertion-deletion,indel)序列,表明该细胞系未出现脱靶效应。

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figshare
创建时间:
2024-10-23
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